Publications

Google Scholar Profile

Highlighted Publications

Nature Methods 2025 First Author Under Review
Quantitative profiling of whole-brain connectomes at single-axon resolution using deep learning and high-resolution light sheet microscopy
A. Attarpour, M. Raffiee, T. Xu, J. Osmann, S. Patel, F. Yu, B. Au, A. Clappison, M. Biparva, R. Zhu, A. Crow, B. Gharagoz, M. Rozak, I. Aubert, J. McLaurin, K. Deisseroth, et al.
Preprint
Nature Methods 2025 First Author
A deep learning pipeline for three-dimensional brain-wide mapping of local neuronal ensembles in teravoxel light-sheet microscopy
A. Attarpour, J. Osmann, A. Rinaldi, T. Qi, N. Lal, S. Patel, M. Rozak, F. Yu, N. Cho, J. Squari, J. McLaurin, M. Raffiee, K. Deisseroth, L. Ye, B. Stefanovic, M. Goubran
Paper Docs
arXiv 2026 Foundation Model
EchoJEPA: A Latent Predictive Foundation Model for Echocardiography
A. Munim, A. Fallahpour, T. Szasz, A. Attarpour, R. Jiang, B. Sooriyakanthan, et al.
Website
Cell 2026
Mapping cellular targets of covalent cancer drugs in the entire mammalian body
Z. Pang, V.H. Leung, C.C. Wang, A. Attarpour, A. Rinaldi, H. Shen, et al.
Paper
eLife 2026
A deep learning pipeline for mapping in situ network-level neurovascular coupling in multi-photon fluorescence microscopy
M.W. Rozak, J.R. Mester, A. Attarpour, A. Dorr, S. Patel, M. Koletar, M.E. Hill, et al.
Human Brain Mapping 2021 First Author 45 citations
Vascular origins of low-frequency oscillations in the cerebrospinal fluid signal in resting-state fMRI: interpretation using photoplethysmography
A. Attarpour, J. Ward, J.J. Chen
Paper
Physics in Medicine & Biology 2019 Equal First Author 36 citations
Computational analysis of non-invasive deep brain stimulation based on interfering electric fields
F. Karimi*, A. Attarpour*, R. Amirfattahi, A. Zeidabadinezhad  (*equal contribution)
Paper
Biomedical Signal Processing and Control 2019 First Author 50 citations
Cuff-less continuous measurement of blood pressure using wrist and fingertip photo-plethysmograms: evaluation and feature analysis
A. Attarpour, A. Mahnam, A. Aminitabar, H. Samani
Paper

Conference Presentations

IGT × ImNO Joint Symposium Mar. 2025 Toronto, Canada
A deep learning pipeline for 3D brain-wide mapping of local neuronal ensembles
SFN Conference Oct. 2024 Chicago, US Poster
An end-to-end deep learning pipeline for 3D mapping of laminar neuronal activity in light sheet data
UBC Tissue Clearing & Expansion Workshop May. 2024 Vancouver, Canada Keynote
ACE — AI-based Cartography of Ensembles
SFN Conference Nov. 2023 Washington, US Nanosymposium
A deep learning pipeline for 3D mapping of neuronal activity in tera-voxel light sheet microscopy data
VAST Conference May. 2023 Montreal, Canada
A deep learning network for 3D segmentation of neurons in tera-voxel light sheet fluorescence microscopy
ISMRM May. 2021 Online
Vascular origins of low-frequency oscillations in the CSF in resting-state fMRI: interpretation using photoplethysmography